I don't know that anyone cares, but here's the end of this saga, at least for the time being. Quadratec is sending me a pre-paid FedEx label and RMAing the window. I expected as much, but I have never returned anything with them and wasn't sure if I should expect a fight over return shipping or not. Good news they are owning it.
Silver lining if there is one, I know A LOT more about zippers now. Maybe I'll retain that knowledge. I've also learned about UV set resin and added another tool/skill to my bag of tricks.
The Quadratec customer service fella said they are aware of the issue with parts availability for their older tops and have discussed actually getting the correct parts in inventory. Now if they would train all of their customer service staff about the incompatibility of various generations of their tops and not sell the wrong part to unsuspecting customers, that'd be even better.
Since I had ruined my original Quadratop's zipper slides and the pin with stops, I had to order new slides. I snagged a pair of large pull YKK #10c sliders off Amazon. I wound up using the Uxcell pin & box set again. I don't guess I needed the pin on the top side, but I wanted the stops and slides to stay on that side like the top originally had. The Uxcell set puts the stops on the pin side instead of the box side, the top originally was the opposite. I wound up putting new Uxcell pin and box on both the old window and the top. Turns out the stops weren't big enough to actually, ya know... stop the new YKK zipper sliders from going past them. I sanded the paint off of the little stop nipples and globed some solder on them to stop the slides. It's a little out of focus on the photo below, but you can see a shiny silver bead of solder on the stop, I did that to both sides of the pin. I'm sure I could still rip the slide past them if I tried, but as long as I don't do anything too bone headed they should work okay-ish.
I now have a functioning zipper again. I cleaned and lubed the zipper teeth, and having actual pulls on the zipper slides instead of zip ties is pretty nice.
The zipper works great!
I still needed to patch up the cracks/splits in the window. The whole reason I started down this path. I was searching for repair tricks that weren't duct tape, I've seen the adhesive vinyl patches and they may be a better option, but I came across some folks using UV set resin. I knew the stuff existed, but never used it before. Looking into it I discovered there's even flexible, soft UV resin. I thought that might be the ticket for a Jeep soft top window.
I had hoped that I could get away with only doing one side of the top, but that didn't work out. I had issues with the worst crack, it kind of spider webbed in a few directions and had deformed over time. If you repair the crack soon after it happened you might get away with it.
I aligned all the cracks in as close to their original position as I could and held everything in place with painters tape, and started squirting resin. This stuff sets up pretty quick with a UV light. It says 5 minutes on the bottle, but it's not moving after 20-30 seconds of the light shining on it.
This is the worst crack. It looked a lot better, but I got impatient. I originally only resined the inside, but when I installed the window I realized it was going to tear if I didn't do the outside too. Instead of taking the window off and doing it on a flat surface I just did it on the Jeep. So I was fighting gravity.
The single crack on the other side looks a lot better, I did both sides with the window off on a flat surface.
That's it, the old cracked Quadratop window is back in, new zipper sliders, box, and pin, and some UV resin patching up the cracks. I still want a new window, but this will hopefully get me through the winter.